BIOMEDICAL IMAGING AND TISSUE PROCESSING

Publications

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Whole Organ Tissue Imaging and Analysis 

Selected Publications

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Oh, Seung Wook, Julie A. Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, et al. “A Mesoscale Connectome of the Mouse Brain.” Nature 508, no. 7495 (April 10, 2014): 207–14. 

 

Vélez-Fort, Mateo, Charly V. Rousseau, Christian J. Niedworok, Ian R. Wickersham, Ede A. Rancz, Alexander P. Y. Brown, Molly Strom, and Troy W. Margrie. “The Stimulus Selectivity and Connectivity of Layer Six Principal Cells Reveals Cortical Microcircuits Underlying Visual Processing.” Neuron 83, no. 6 (September 17, 2014): 1431–43.

 

Feng, David, Chris Lau, Lydia Ng, Yang Li, Leonard Kuan, Susan M. Sunkin, Chinh Dang, and Michael Hawrylycz. “Exploration and Visualization of Connectivity in the Adult Mouse Brain.” Methods, Spatial mapping of multi-modal data in neuroscience, 73 (February 2015): 90–97. 

 

Kim, Yongsoo, Kannan Umadevi Venkataraju, Kith Pradhan, Carolin Mende, Julian Taranda, Srinivas C. Turaga, Ignacio Arganda-Carreras, et al. “Mapping Social Behavior-Induced Brain Activation at Cellular Resolution in the Mouse.” Cell Reports 10, no. 2 (January 13, 2015): 292–305. 

 

Vousden, Dulcie A., Jonathan Epp, Hiroyuki Okuno, Brian J. Nieman, Matthijs van Eede, Jun Dazai, Timothy Ragan, et al. “Whole-Brain Mapping of Behaviourally Induced Neural Activation in Mice.” Brain Structure and Function, (April 24, 2014): 1–15.

 

Ragan, T., Kadiri, L.R., Venkataraju, K.U., Bahlmann, K., Sutin, J., Taranda, J., Arganda-Carreras, I., Kim, Y., Seung, H.S., and Osten, P. Serial two-photon tomography: an automated method for ex-vivo mouse brain imaging. Nature Methods, 2012.

Ragan, T., et al., High-resolution whole organ imaging using two-photon tissue cytometry. Journal of Biomedical Optics, 2007. 12(1): p. 014015.

 

Gleave, Jacqueline A., Jason P. Lerch, R. Mark Henkelman, and Brian J. Nieman. “A Method for 3D Immunostaining and Optical Imaging of the Mouse Brain Demonstrated in Neural Progenitor Cells.” PLoS ONE 8, no. 8 (August 6, 2013):

Kim, K.H., et al., Three-dimensional tissue cytometer based on high-speed multiphoton microscopy. Cytometry. Part A : The Journal of the International Society for Analytical Cytology, 2007. 71(12): p. 991-1002.

Bahlmann, K., et al., Multifocal multiphoton microscopy (MMM) at a frame rate beyond 600 Hz. Optics Express, 2007. 15(17): p. 10991-10998.

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